PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g08730.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 166aa    MW: 18407 Da    PI: 10.1766
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g08730.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.77.9e-1591137151
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                     + y+G r ++ +gr++ eIrdp +   ++r++lg+f++aeeA +a++aa++
  Vang02g08730.1  91 PWYRGMRKRP-WGRFATEIRDPLK---KARVWLGTFDSAEEAGRAYDAAAR 137
                     57********.**********743...5*********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-991136IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1592138IPR016177DNA-binding domain
PROSITE profilePS5103218.21592136IPR001471AP2/ERF domain
SMARTSM003805.0E-1892147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-2293137IPR001471AP2/ERF domain
PRINTSPR003676.8E-1093104IPR001471AP2/ERF domain
CDDcd000181.36E-2193136No hitNo description
PRINTSPR003676.8E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MDLPDPDGRG RHHGRLLLHR LRLSLLQLPL QGTGTSEDRP KSCFESQRSN SLFPEGNLMS  60
LKGNMRKGRG RATSVVTAAA VATNGSLLKE PWYRGMRKRP WGRFATEIRD PLKKARVWLG  120
TFDSAEEAGR AYDAAARTPL PFDLNAPLFD DVAADDDLRC TVLYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-1593136650ATERF1
3gcc_A9e-1593136650ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-170AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0L9TKS12e-67A0A0L9TKS1_PHAAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15712710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.16e-19ethylene response factor 7